Bacteroides gallinaceum An558

 

Bacteroidetes  Bacteroidia Bacteroidales Bacteroidaceae

Genome size: 4 182 994 bp

Genomic GC% content: 46.00 %

Scanning electron microscopy (20 000x magnification)

 

TOP 15 in enzymes expressed during growth in BHI medium as determined by protein mass spectrometry

Enzyme PSM counts Pathway
Malate dehydrogenase (EC=1.1.1.37) 250 Citrate cycle (TCA cycle)
Alpha-galactosidase AgaA (EC=3.2.1.22) 126 Galactose metabolism
Pyrophosphate–fructose 6-phosphate 1-phosphotransferase (EC=2.7.1.90) 168 Glycolysis / Gluconeogenesis
Fructose-bisphosphate aldolase (EC=4.2.1.13) 203 Glycolysis / Gluconeogenesis
Glyceraldehyde-3-phosphate dehydrogenase A (EC=1.2.1.12) 276 Glycolysis / Gluconeogenesis
Phosphoenolpyruvate carboxykinase (ATP) (EC=4.1.1.49) 993 Glycolysis / Gluconeogenesis
Phosphoribosylformylglycinamidine synthase (EC=6.3.5.3) 340 Purine metabolism
Pyruvate kinase (EC=2.7.1.40) 130 Pyruvate metabolism
Pyruvate:ferredoxin oxidoreductase (EC=1.2.7.1) 298 Pyruvate metabolism
Formate acetyltransferase (EC=2.3.1.54) 153 Pyruvate metabolism
Glycogen phosphorylase (EC=2.4.1.1) 227 Starch and sucrose metabolism
Levanase (EC=3.2.1.80) 201 Starch and sucrose metabolism
Fumarate reductase flavoprotein subunit (EC=1.3.5.4) 271
Transketolase (EC=2.2.1.1) 120
Phosphoglucomutase (EC=5.4.2.2) 112

MS raw data: An558

16S rRNA sequence:

ATGAAGAGTTTGATCCTGGCTCAGGATGAACGCTAGCTACAGGCCTAACACATGCAAGTCGAGGGGCAGCATGGGCTTAGCTTGCTAAGCCTGATGGCGACCGGCGCACGGGTGAGTAACGCGTATCCGACCTTCCGGCGGCCCGGGTCCAGCCTTTCGAAAGAAAGATTAATCCCCGATGGTGTCAGGCAGTTCCATGACAGCCTGACTAAAGAATTATCGGCCGCCGATGGGGATGCGTTCCATTAGCTTGTTGGCGGGGTAACGGCCCACCAAGGCGACGATGGATAGGGGTTCTGAGAGGAAGGCCCCCCACATTGGGACTGAGACACGGCCCAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGCGAGCCTGAACCAGCCAAGTAGCGTGGAGGATGACTGCCCTACGGGTTGTAAACTCCTTTTGCAGGGGGATAAAGTGTGCCACGCGTGGCATATTGCAGGTACCCTGCGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGCCCCTTAAGTCAGCTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGAAACTGTGGGGCTTGAGTACGGTCGCGGCATGCGGAATTCGTGGTGTAGCGGTGAAATGCATAGATATCACGAAGAACCCCGATTGCGAAGGCAGCATGCCAGCCCGCCACTGACGTTGAGGCTCGAAGGTGCGGGTATCAAACAGGATTAGATACCCTGGTAGTCCGCACGGTAAACGATGGACACCCGCTGTCGGCGATATACAGTCGGCGGCCAAGCGAAAGCGTTAAGTGTCCCACCTGGGGAGTACGCCGGCAACGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAACATGTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAACTGCGCCTGAATGTGCCGGAAACGGTACAGCCGCAAGGCAGGCGCGGAGGTGCTGCATGGTTGTCGTCAGCTCGTGCCGTGAGGTGTCGGCTTAAGTGCCATAACGAGCGCAACCCCTTCCGGCAGTTGCCATCAGGTGATGCTGGGTACTCTGCCGGTACTGCCATCGTAAGATGCGAGGAAGGTGGGGATGACGTCAAATCAGCACGGCCCTTACGTCCGGGGCTACACACGTGTTACAATGGGGGGTACAGAGGGCAGCCAGCCGGCGACGGCGCGCGAATCCCGAAATCCCCTCCCAGTTCGGACTGGAGCCTGCAACCCGGCTCCACGAAGCTGGATTCGCTAGTAATCGCGCATCAGCCATGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGAAAGCCGGGGGTACCTGAAGTGCGTAACCGCAAGGGGCGCCCTAGGGTAAAACCGGTGATTGGGGCTAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTTT