Bacteroides caecicola ET2

Bacteroidetes  Bacteroidia Bacteroidales Bacteroidaceae

Velikost genomu: 3 437 559 bp

Obsah GC% v genomu: 45,10 %

Skenovací elektronová mikroskopie (zvětšení 20 000x)

TOP 15 enzymů exprimovaných během růstu v BHI mediu stanovené proteinovou hmotnostní spektrometrií

Enzyme PSM counts Pathway
Fumarate hydratase class I (EC=4.2.1.2) 111 Citrate cycle (TCA cycle)
Glyceraldehyde-3-phosphate dehydrogenase(EC=1.2.1.12) 2271 Glycolysis
Phosphoenolpyruvate carboxykinase (ATP) (EC=4.1.1.49) 717 Glycolysis
Pyruvate:ferredoxin oxidoreductase (EC=1.2.7.1) 490 Glycolysis
Enolase (EC=4.2.1.11) 194 Glycolysis
Phosphoglucomutase (EC=5.4.2.2) 175 Glycolysis
Fructose-bisphosphate aldolase (EC=4.1.2.13) 114 Glycolysis
Pyruvate kinase (EC=2.7.1.40) 112 Glycolysis
Meso-diaminopimelate D-dehydrogenase (EC=1.4.1.16) 110 Lysine biosynthesis
Adenylosuccinate synthetase (EC=6.3.4.4) 123 Purine metabolism
Polyribonucleotide nucleotidyltransferase (EC=2.7.7.8) 200
Biotin carboxylase (EC=6.3.4.14) 153
Fumarate reductase flavoprotein subunit (EC=1.3.5.4) 173 Anaerobní respirace
O-acetyl-L-homoserine sulfhydrylase (EC=2.5.1.-) 101
Polyribonucleotide nucleotidyltransferase (EC=2.7.7.8) 102

Sekvence 16S rRNA:

ATGAAGAGTTTGATCCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATGCAAGTCGAGGGGCAGCATGTATCTGGCTTGCCAGATACGATGGCGACCGGCGCACGGGTGAGTAACGCGTATCCAACCTGCCCCGTACACGGGGATAGCCTTCCGAAAGGGAGATTAATACCCGATGATGTCAGGAGTTCGCATGTAAACCTGACTAAAGTTATTACGGTACGGGAGGGGGGTGCGTTCCATTAGGTAGTAGGCGGGGTAACGGCCCACCTAGCCGACGATGGATAGGGGTTCTGAGAGGAAGGTCCCCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGGGAGGCTGAACCAGCCAAGTAGCGTGAAGGATGACGGCCCTACGGGTTGTAAACTTCTTTTATGCGGGATTAACGTGAGGTACGTGTACCTTATTGCAGGTACCGCATGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCAGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGCATGTCAAGTCAGCTGTGAAAGTTCGGGGCTCAACCTTGGAATTGCAGTTGAAACTGGCGTGCTTGAGTTCGGTCGAGGCAGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACCCCGATTGCGAAGGCAGCTTGCCAGGCCTGGACTGACGTTGAGGCTCGAAGGTGCGGGTATCGAACAGGATTAGATACCCTGGTAGTCCGCACGGTAAACGATGGATACTCGCTGTCGGCGATACACGGTCGGCGGCCAAGCGAAAGCGTTAAGTATCCCACCTGGGGAGTACGCCGGCAACGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAACATGTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAACTGTGCCTGACTGCCTCAGAGATGGGGCTTCCAGCAATGGCAGGCATGGAGGTGCTGCATGGTTGTCGTCAGCTCGTGCCGTGAGGTGTCGGCTTAAGTGCCATAACGAGCGCAACCCCTCCCGCCAGTTGCCATCAGGTAAAGCTGGGCACTCTGGGGGCACTGCCACCGCAAGGTGTGAGGAAGGTGGGGATGACGTCAAATCAGCACGGCCCTTACGTCCGGGGCTACACACGTGTTACAATGGGAGGTCACAGAGGGCTGCTACCCGGCGACGGGACGCCAATCCCCAAACCCTCCCTCAGTACGGACTGGAGTCTGCAACCCGACTCCACGAAGCTGGATTCGCTAGTAATCGCGCATCAGCCACGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGAAAGCCGGCGGTGCCTGAAGTGCGTAACCGCAAGGGGCGCCCTAGGGTAAAGCCGGTGATTGGGGCTAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTTT