Phocaeicola (Bacteroides) dorei An41

Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae

Velikost genomu: 5 463 463 bp

Obsah GC% v genomu: 42,00 %

Skenovací elektronová mikroskopie (zvětšení 30 000x)

TOP 15 enzymů exprimovaných během růstu v BHI mediu stanovené proteinovou hmotnostní spektrometrií

Enzyme PSM counts Pathway
Pyrophosphate-dependent fructose 6-phosphate-1-kinase (EC 2.7.1.90) 530 Glycolysis
Fructose-bisphosphate aldolase class II (EC 4.1.2.13) 384 Glycolysis
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 3845 Glycolysis
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) 886 Glycolysis
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) 635 Glycolysis
Methylmalonyl-CoA decarboxylase, alpha chain (EC 4.1.1.41) 562 Succinate-propionate conversion
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) 367
Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16) 384 Lysine biosynthesis
NAD-specific glutamate dehydrogenase (EC 1.4.1.2) 272 Arginine biosynthesis
Alanine dehydrogenase (EC 1.4.1.1) 394
ATP synthase beta chain (EC 3.6.3.14) 377
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) 290
Serine hydroxymethyltransferase (EC 2.1.2.1) 257
Glutamate decarboxylase (EC 4.1.1.15) 251
Glucosamine-6-phosphate deaminase (EC 3.5.99.6) 244

 

Sekvence 16S rRNA:

ATGAAGAGTTTGATCCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATGCAAGTCGAGGGGCAGCATGGTCTTAGCTTGCTAAGGCTGATGGCGACCGGCGCACGGGTGAGTAACACGTATCCAACCTGCCGTCTACTCTTGGCCAGCCTTCTGAAAGGAAGATTAATCCAGGATGGGATCATGAGTTCACATGTCCGCATGATTAAAGGTATTTTCCGGTAGACGATGGGGATGCGTTCCATTAGATAGTAGGCGGGGTAACGGCCCACCTAGTCAACGATGGATAGGGGTTCTGAGAGGAAGGTCCCCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGATGGCCTGAACCAGCCAAGTAGCGTGAAGGATGACTGCCCTATGGGTTGTAAACTTCTTTTATAAAGGAATAAAGTCGGGTATGCATACCCGTTTGCATGTACTTTATGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGATGTTTAAGTCAGTTGTGAAAGTTTGCGGCTCAACCGTAAAATTGCAGTTGATACTGGATGTCTTGAGTGCAGTTGAGGCAGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCCTGCTAAGCTGCAACTGACATTGAGGCTCGAAAGTGTGGGTATCAAACAGGATTAGATACCCTGGTAGTCCACACGGTAAACGATGAATACTCGCTGTTTGCGATATACGGCAAGCGGCCAAGCGAAAGCGTTAAGTATTCCACCTGGGGAGTACGCCGGCAACGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAACATGTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTAAATTGCACTCGAATGATCCGGAAACGGTTCAGCTAGCAATAGCGAGTGTGAAGGTGCTGCATGGTTGTCGTCAGCTCGTGCCGTGAGGTGTCGGCTTAAGTGCCATAACGAGCGCAACCCTTGTTGTCAGTTACTAACAGGTGATGCTGAGGACTCTGACAAGACTGCCATCGTAAGATGTGAGGAAGGTGGGGATGACGTCAAATCAGCACGGCCCTTACGTCCGGGGCTACACACGTGTTACAATGGGGGGTACAGAGGGCCGCTACCACGCGAGTGGATGCCAATCCCTAAAACCCCTCTCAGTTCGGACTGGAGTCTGCAACCCGACTCCACGAAGCTGGATTCGCTAGTAATCGCGCATCAGCCACGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGGGAGCCGGGGGTACCTGAAGTGCGTAACCGCGAGGATCGCCCTAGGGTAAAACTGGTGACTGGGGCTAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTT