Bacteroides coprophilus ET5

Bacteroidetes Bacteroidia Bacteroidales Prevotellaceae

Velikost genomu: 3 679 794 bp

Obsah GC% v genomu: 53,30 %

Skenovací elektronová mikroskopie (zvětšení 20 000x)

 

TOP 15 enzymů exprimovaných během růstu v BHI mediu stanovené proteinovou hmotnostní spektrometrií

Enzyme PSM counts Pathway
Transaldolase (EC=2.2.1.2) 106 Pentose phosphate pathway
Phosphoglucomutase (EC=5.4.2.2) 129 Glycolysis/Gluconeogenesis
Glucose-6-phosphate isomerase (EC=5.3.1.9) 123 Glycolysis/Gluconeogenesis
Glyceraldehyde-3-phosphate dehydrogenase (EC=1.2.1.12) 245 Glycolysis/Gluconeogenesis
Phosphoenolpyruvate carboxykinase (EC=4.1.1.49) 756 Glycolysis/Gluconeogenesis
Pyruvate:ferredoxin oxidoreductase (EC=1.2.7.1) 348 Glycolysis/Gluconeogenesis
Pyruvate, phosphate dikinase (EC=2.7.9.1) 276 Glycolysis/Gluconeogenesis
2-oxoglutarate oxidoreductase (EC=1.2.7.3) 112 Citrate cycle (TCA cycle)
Fumarate reductase (EC=1.3.5.1) 200 Citrate cycle (TCA cycle)
Fumarate hydratase (EC=4.2.1.2) 116 Citrate cycle (TCA cycle)
Malate dehydrogenase (EC=1.1.1.37) 141 Citrate cycle (TCA cycle)
Phosphoserine aminotransferase (EC=2.6.1.52) 182 Glycine, serine and threonine metabolism
Hydroxypyruvate reductase (EC=1.1.1.81) 149 Glycine, serine and threonine metabolism
Propionyl-CoA carboxylase (EC=6.4.1.3) 255 Valine, leucine and isoleucine degradation
NAD-specific glutamate dehydrogenase (EC=1.4.1.2) 190 Arginine biosynthesis

 

Sekvence 16S rRNA:

TTCATTACAATGAAGAGTTTGATCCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATGCAAGTCGCGGGGCAGCATAGGGTTTCAGCAATGAAATTCGGATGGCGACCGGCGCACGGGTGAGTAACACGTATCCAACCTGCCCTTTACTCGGGGATAGCCTTGCGAAAGTAAGATTAATACCCGATGGCATTGGATTTCCGCATGGGGATTCAATTAAAGGTGAAAATTGGTAAAGGATGGGGATGCGTTCCATTAGGCAGTAGGCGGGGTAACGGCCCACCTAACCGACGATGGATAGGGGTTCTGAGAGGAAGGTCCCCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGGCGCGAGCCTGAACCAGCCAAGTAGCGTGAAGGATGACTGCCCTATGGGTTGTAAACTTCTTTTATACGGGAATAAAGTCACTTACGTGTAAGTGTTTGTATGTACCTTATGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGATGGGCTTTTAAGTCAGTTGTGAAATTCTGCGGCTCAACCGTAGGACTGCAGTTGAAACTGGGAGCCTTGAGTGCAGTTGAGGTGCATGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGTGCACCAAGCTGTAACTGACATTGATGCTCGAAAGTGTGGGTATCAAACAGGATTAGATACCCTGGTAGTCCACACGGTAAACGATGAATACTCGCTGTTGGCGATACAATGTCAGCGGCCAAGCGAAAGCATTAAGTATTCCACCTGGGGAGTACGCCGGCAACGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAACATGTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAACTGCAACCGAATGTCGCGGAAACGCGTCAGCTAGCAATAGCGGTTGTGGAGGTGCTGCATGGTTGTCGTCAGCTCGTGCCGTGAGGTGTCGGCTTAAGTGCCATAACGAGCGCAACCCTTGCCGGCAGTTGCCATCAGGTAATGCTGGGGACTCTGCCGGGACTGCCATCGTAAGATGCGAGGAAGGTGGGGATGACGTCAAATCAGCACGGCCCTTACGTCCGGGGCTACACACGTGTTACAATGGGGGGTACAGAAGGCTGCTACCTGGCGACAGGATGCCAATCCCGAAAACCCCTCCCAGTTCGGACTGGAGCCTGCAACCCGGCTCCACGAAGCTGGATTCGCTAGTAATCGCGCATCAGCCATGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGGGAGCCGGGGGTACCTGAAGTACGTAACCGCGAGGGTCGTCCTAGGGTAAAACCGGTGACTGGGGCTAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTTTCT