Bacteroidetes | Bacteroidia | Bacteroidales | Bacteroidaceae |
Velikost genomu: 3 628 556 bp
Obsah GC% v genomu: 50,60%
Skenovací elektronová mikroskopie (zvětšení 20 000x)
TOP 15 enzymů exprimovaných během růstu v BHI mediu stanovené proteinovou hmotnostní spektrometrií
Enzyme | PSM counts | Pathway |
Fumarate reductase (EC=1.3.5.4) | 136 | Anaerobic respiration |
Malate dehydrogenase (EC=1.1.1.37) | 259 | Citrate cycle (TCA cycle) |
Fumarate hydratase class I, anaerobic (EC=4.2.1.2) | 130 | Citrate cycle (TCA cycle) |
Beta-galactosidase (EC=3.2.1.23) | 167 | Galactose metabolism |
Phosphoglucomutase (EC=5.4.2.2) | 161 | Glycolysis / Gluconeogenesis |
Pyrophosphate–fructose 6-phosphate 1-phosphotransferase (EC=2.7.1.90) | 365 | Glycolysis / Gluconeogenesis |
Glyceraldehyde-3-phosphate dehydrogenase (EC=1.2.1.12) | 2100 | Glycolysis / Gluconeogenesis |
Phosphoenolpyruvate carboxykinase (ATP) (EC=4.1.1.49) | 343 | Glycolysis / Gluconeogenesis |
Pyruvate kinase (EC=2.7.1.40) | 126 | Glycolysis / Gluconeogenesis |
Pyruvate:ferredoxin oxidoreductase (EC=1.2.7.1) | 332 | Glycolysis / Gluconeogenesis |
Pyruvate, phosphate dikinase (EC=2.7.9.1) | 101 | Glycolysis / Gluconeogenesis |
NADP-dependent malic enzyme (EC=1.1.1.40) | 129 | Pyruvate metabolism |
Glycogen phosphorylase (EC=2.4.1.1) | 181 | Starch and sucrose metabolism |
Methylmalonyl-CoA mutase (EC=5.4.99.2) | 171 | Valine, leucine and isoleucine degradation |
Propionyl-CoA carboxylase (EC=6.4.1.3) | 103 | Valine, leucine and isoleucine degradation |
MS raw data: ET71
kultivační médium: čokoládový agar
Sekvence 16S rRNA:
ATTACAGTGAAGAGTTTGATCCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATGCAAGTCGAGGGGCATCATGAGCTTAGCTTGCTAAGTTTGATGGCGACCGGCGCACGGGTGAGTAACGCGTATCCGACCTGCCTTCCACTCGGGGATAGCCTTTCGAAAGAAAGATTAATACCCGATGGCATAAGCGAACTGCCTGGTTTGCTTATTAAAGATTCATCGGTGGAAGATGGGGATGCGTTCCATTAGCTTGTTGGCGGGGTAACGGCCCACCAAGGCTACGATGGATAGGGGTTCTGAGAGGAAGGTCCCCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGCCGCGAGGCTGAACCAGCCAAGTAGCGTGAAGGATGACTGCCCTATGGGTTGTAAACTTCTTTTATAAGGGAATAAAGTGTTGTACGTGTACGATATTGCATGTACCTTATGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGCGATTAAGTCAGTTGTGAAAGTTCGCGGCTCAACCGTGAAATTGCAGTTGAAACTGGTTGCCTTGAGTGCGGCAGAGGCAGGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTTGCTGGACCGTAACTGACGTTGAGGCTCGAAAGTGTGGGTATCAAACAGGATTAGATACCCTGGTAGTCCACACAGTAAACGATGGACACTCGCTGTTGGCGATATACAGTCAGCGGCTTAGCGAAAGCGTTAAGTGTCCCACCTGGGGAGTACGCCGGCAACGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAACATGTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTGAACTGTGCCTGACAGATTCGGAAACGGATATTCCCTTCGGGGCAGGCATGGAGGTGCTGCATGGTTGTCGTCAGCTCGTGCCGTGAGGTGTCGGCTTAAGTGCCATAACGAGCGCAACCCTTACTGCCAGTTGCCATCGGGTAATGCCGGGCACTCTGGTAGGACTGCCGTCGTAAGATGTGAGGAAGGTGGGGATGACGTCAAATCAGCACGGCCCTTACGTCCGGGGCTACACACGTGTTACAATGGGGGGTACAGCAGGCCGCTACCCGGCGACGGGATGCCAATCCTGAAAGCCCCTCTCAGTTCGGACTGGAGTCTGCAACCCGACTCCACGAAGCTGGATTCGCTAGTAATCGCGCATCAGCCACGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGAAAGCCGGGGGTACCTGAAGTGCGTAACCGCGAGGGGCGCCCTAGGGTAAAACCGGTGATTGGGGCTAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTTTCTG