Bacteroides plebeius An426

Bacteroidetes Bacteroidia Bacteroidales Bacteroidaceae

Velikost genomu: 3 813 090 bp

Obsah GC% v genomu: 45,00 %

Skenovací elektronová mikroskopie (zvětšení 20 000x)

 

TOP 15 enzymů exprimovaných během růstu v BHI mediu stanovené proteinovou hmotnostní spektrometrií

Enzyme PSM counts Pathway
Succinate dehydrogenase (EC 1.3.5.1) 211 Citrate cycle (TCA cycle)
Fumarate hydratase (EC 4.2.1.2) 262 Citrate cycle (TCA cycle)
Malate dehydrogenase (EC 1.1.1.37) 193 Citrate cycle (TCA cycle)
Cysteine synthase (EC 2.5.1.47) 356 Cysteine and methionine metabolism
Phosphoglucomutase (EC 5.4.2.2) 202 Glycolysis/Gluconeogenesis
Pyrophosphate-dependent fructose 6-phosphate-1-kinase (EC 2.7.1.90) 215 Glycolysis/Gluconeogenesis
Fructose-bisphosphate aldolase (EC 4.1.2.13) 464 Glycolysis/Gluconeogenesis
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) 2484 Glycolysis/Gluconeogenesis
Phosphoglycerate kinase (EC 2.7.2.3) 234 Glycolysis/Gluconeogenesis
Enolase (EC 4.2.1.11) 248 Glycolysis/Gluconeogenesis
Phosphoenolpyruvate carboxykinase (EC 4.1.1.49) 747 Glycolysis/Gluconeogenesis
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.1) 446 Glycolysis/Gluconeogenesis
ATP synthase (EC 7.1.2.2 ) 285 Oxidative phosphorylation
Pyruvate formate-lyase (EC 2.3.1.54) 306 Pyruvate metabolism
Acetate kinase (EC 2.7.2.1) 302 Pyruvate metabolism

 

MS raw data: An426

Sekvence 16S rRNA:

GAAGAGTTTGATCCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATGCAAGTCGAGGGGCAGCAGGATTGAAGCTTGCTTCAATTGACGGCGACCGGCGCACGGGTGAGTAACGCGTATCCAACCTTCCGTACACTCAGGGATAGCCTTTCGAAAGAAAGATTAATACCTGATGGTATCTTAAGCACACATGTAATTAAGATTAAAGATTCATCGGTGTACGATGGGGATGCGTTCCATTAGGTAGTAGGCGGGGTAACGGCCCACCTAGCCGACGATGGATAGGGGTTCTGAGAGGAAGGTCCCCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGACGAGAGTCTGAACCAGCCAAGTAGCGTGAAGGATGAAGGTCCTACGGATTGTAAACTTCTTTTATAAGGGAATAAACCCTTCCACGTGTGGGAGCTTGTATGTACCTTATGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGCAGACGGGTCGTTAAGTCAGCTGTGAAAGTTTGGGGCTCAACCTTAAAATTGCAGTTGATACTGGCGTCCTTGAGTGCGGTTGAGGTGTGCGGAATTCGTGGTGTAGCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCACACTAAGCCGTAACTGACGTTCATGCTCGAAAGTGTGGGTATCAAACAGGATTAGATACCCTGGTAGTCCACACGGTAAACGATGGATACTCGCTGTTGGCGATATACGGTCAGCGGCTTAGCGAAAGCGTTAAGTATCCCACCTGGGGAGTACGCCGGCAACGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAACATGTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTAAATTGCAAAGGAATTGCGTGGAAACATGCAAGTCTTCGGACCTTTGTGAAGGTGCTGCATGGTTGTCGTCAGCTCGTGCCGTGAGGTGTCGGCTTAAGTGCCATAACGAGCGCAACCCTCGCCGCCAGTTACTAACAGTTAAAGCTGAGGACTCTGGCGGGACTGCCATCGTAAGATGTGAGGAAGGTGGGGATGACGTCAAATCAGCACGGCCCTTACGTCCGGGGCTACACACGTGTTACAATGGGCGGTACAGAAGGCAGCTACCTGGCGACAGGATGCCAATCCCTAAAGCCGCTCTCAGTTCGGACTGGAGTCTGCAACCCGACTCCACGAAGCTGGATTCGCTAGTAATCGCGCATCAGCCACGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGAAAGCCGGGGGTACCTGAAGTGCGTAACCGCAAGGAGCGCCCTAGGGTAAAACCGGTAATTGGGGCTAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTTT