Bacteroidetes | Bacteroidia | Bacteroidales | Porphyromonadaceae |
Velikost genomu: 3 388 394 bp
Obsah GC% v obsahu: 52,70 %
Skenovací elektronová mikroskopie (zvětšení 20 000x)
TOP 15 enzymů exprimovaných během růstu v BHI mediu stanovené proteinovou hmotnostní spektrometrií
Enzyme | PSM counts | Pathway |
Pyrophosphate–fructose 6-phosphate 1-phosphotransferase (EC 2.7.1.90) | 367 | Glycolysis |
Fructose-bisphosphate aldolase (EC 4.1.2.13) | 208 | Glycolysis |
Glyceraldehyde-3-phosphate dehydrogenase A (EC 1.2.1.12) | 4163 | Glycolysis |
Pyruvate:ferredoxin oxidoreductase (EC 1.2.7.1) | 404 | Glycolysis |
Pyruvate, phosphate dikinase (EC 2.7.9.1) | 359 | Glycolysis |
Phosphoenolpyruvate carboxykinase (ATP) (EC 4.1.1.49) | 845 | Glycolysis |
Inosine-5′-monophosphate dehydrogenase (EC 1.1.1.205) | 408 | Purine metabolism |
Glycogen phosphorylase (EC 2.4.1.1) | 286 | Starch and sucrose metabolism |
Malate dehydrogenase (EC 1.1.1.37) | 976 | TCA |
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) | 566 | succinate-propionate conversion |
Methylmalonyl-CoA mutase large subunit (EC 5.4.99.2) | 272 | succinate-propionate conversion |
Methylmalonyl-CoA mutase small subunit (EC 5.4.99.2) | 334 | succinate-propionate conversion |
Glucosamine-6-phosphate deaminase (EC 3.5.99.6) | 542 | |
Caffeyl-CoA reductase-Etf complex subunit CarE (EC 1.3.1.108) | 355 | |
Enoyl-[acyl-carrier-protein] reductase [NADH] FabI (EC 1.3.1.9) | 287 |
MS raw data: ET7
Sekvence 16S rRNA:
CGAAGAGTTTGATCCTGGCTCAGGATGAACGCTAGCGACAGGCCTAACACATGCAAGTCGAGGGGCAGCGCGGAGGTAGCAATACATCTGGCGGCGACCGGCGCACGGGTGAGTAACACGTATGCAATCTGCCTGTAACAGGGGGATAACCCGGAGAAATCCGGCCTAATACCCCATAACGACGAGATCTCGCATGGGGATTCGTCTAAAGAGAGCAATCTTGGTTACAGATGAGCATGCGGTCCATTAGCCAGTTGGCGGGGTAACGGCCCACCAAAGCGACGATGGATAGGGGTTCTGAGAGGAAGGTCCCCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGAGGAATATTGGTCAATGGTCGGCAGACTGAACCAGCCAAGTCGCGTGAAGGAAGACGGCCCTAAGGGTTGTAAACTTCTTTTGTCGGAGAGTAAAGGTCTTCACGAGTGGAGATTTGCAAGTATCCGAAGAAAAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCGAGCGTTATCCGGATTTATTGGGTTTAAAGGGTGCGTAGGCGGCATGACAAGTCAGCGGTGAAATGCCCGGGCTTAACCCGGGAGCTGCCGTTGAAACTGTCGAGCTAGCGTGCACAAGAGGTAGGCGGAATGCGTGGTGTAGCGGTGAAATGCATAGATATCACGCAGAACCCCGATTGCGAAGGCAGCCTACTAGGGTGCAACGGACGCTGAAGCACGAAAGCGTGGGTATCGAACAGGATTAGATACCCTGGTAGTCCACGCAGTAAACGATGAATACTAACTGTTTGCGATATAATGTAAGTGGTACAGCGAAAGCGTTAAGTATTCCACCTGGGGAGTACGCCGGCAACGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGAGGAACATGTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTCAAACGCAGGGGGAATATGGGTGAAAGCCCATAGTCGGTAACGGCCGCCTGCGAGGTGCTGCATGGTTGTCGTCAGCTCGTGCCGTGAGGTGTCGGCTTAAGTGCCATAACGAGCGCAACCCCTATTGACAGTTACTAACGGGTCAGGCCGAGGACTCTGTCGAGACTGCCGGCGCAAGCCGCGAGGAAGGTGGGGATGACGTCAAATCAGCACGGCCCTTACGTCCGGGGCGACACACGTGTTACAATGGCAGGTACAGAAGGCAGCCAACCAGCAATGGTGAGCGAATCCCAAAAACCTGTCTCAGTTCGGATTGGAGTCTGCAACTCGACTCCATGAAGCTGGATTCGCTAGTAATCGCGCATCAGCCATGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGGAAGCCGGGAGTACCTGAAGCATGCAACCGCAAGGAGCGTACGAAGGTAATACCGGTAACTGGGGCTAAGTCGTAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTTT